bioinformatics

Using htsget-rs GA4GH's public endpoint
htsget-rs demo up and running at GA4GH
Last updated on Nov 27, 2024 1 min read rust, bioinformatics, htsget
GSoC 2022, GA4GH and BioSerDe (pt2)
Google Summer of Code 2022 with GA4GH (pt2)
Last updated on Oct 9, 2022 4 min read rust, BioSerDe, bioinformatics, serialization
GSoC 2022, GA4GH and BioSerDe
Google Summer of Code 2022 with GA4GH
Last updated on Oct 11, 2022 6 min read rust, BioSerDe, bioinformatics, serialization
IGV frontend (desktop client) setup
Adding the Amazon provisioning URL to IGV desktop
Last updated on Sep 21, 2021 3 min read bioinformatics, infrastructure
GSoC 2021, GA4GH and htsget-rs
Google Summer of Code 2021 with GA4GH: A pure Rust htsget implementation is born
Last updated on Nov 15, 2021 5 min read rust, htsget, bioinformatics, infrastructure
Amazon IGV backend setup
Setting up a secure Amazon Cognito and S3 backend for IGV desktop
Last updated on Sep 21, 2021 10 min read bioinformatics, infrastructure
Oncoviral integration in cervical never-responder
We are detecting sites of HPV18 oncovirus integration into the human genome, and investigating the mechanism it facilitated cervical cancer progression
Last updated on Nov 28, 2024 9 min read bioinformatics
Panel of normals
Building a panel of unrelated normals to filter somatic variant calls from artefacts and germline leakage.
Last updated on Nov 28, 2024 6 min read bioinformatics
Amazon for the Integrative Genomics Viewer (IGV)
On expanding the Broad’s Integrative Genomics Viewer (IGV) to read input directly from AWS S3.
Last updated on Sep 22, 2021 7 min read bioinformatics, infrastructure
BWA-MEM vs Minimap2: WGS somatic variant calling
We evaluate differences between bwa-mem and minimap2-aligned reads for somatic variant calling.
Last updated on Nov 28, 2024 5 min read bioinformatics