Setting up a secure Amazon Cognito and S3 backend for IGV desktop
We are detecting sites of HPV18 oncovirus integration into the human genome, and investigating the mechanism it facilitated cervical cancer progression
Building a panel of unrelated normals to filter somatic variant calls from artefacts and germline leakage.
On expanding the Broad's Integrative Genomics Viewer (IGV) to read input directly from AWS S3.
We evaluate differences between bwa-mem and minimap2-aligned reads for somatic variant calling.